if you can access your date you might start making a backup before doing anything else and maybe make it worth with any repair attempts
as long as the reason for fails are not clear its not a good choice to take any action, usually data recovery is a read only thing with the original disks, you try to prevent any further changes so you might start more then one attempt to find a solution
you still did not write any useful information a asked for
afaik the 3615/17 can handle shr when present an disks, the options in synoinfo.conf will only add the ability to create/extend shr volumes
so whatever hapend must be something else, guessing is not the right way for data recovery
if you want your data back then take what you have now and do a backup
you already started changing things with the attempt to access it with ubuntu, that does not help you with dsm, might even make things worse, at least one disks seems still be "missing" as ubuntu had one missing in md2 and md3, might be one big disk that has data from both raid sets
anyway, BACKUP NOW!!!