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Where is the OS stored ?


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No, everything isn't on the flash drive the flash drive is only used in the boot process, post boot it has not function.

 

There is an OS/DSM partition on every drive in the system. Yes you can recover drive 0 provided you're using multi disk groups/volumes in some form of raid.

 

In a one drive set-up there is zero redundancy, so recovery is extremely unlikely. If you're lucky you may be able to recover the data by mounting the drive under a linux system and using conventional file copy to recover data to a backup drive/system.

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